sortSpikesOnline

PURPOSE

online sorting

SYNOPSIS

function [assigned, nrAssigned, baseSpikes, baseSpikesID] = sortSpikesOnline( spikes, stdEstimate, sortTill, thresholdMethod, Cinv, transformedSpikes )

DESCRIPTION

online sorting

thresholdMethod: 
1 -> use raw data. stdEstimate is threshold in this case.
2-> use covariance. stdEstimate is chi2 value in this case. covariance
matrix Cinv needs to be given. Cinv is the inverted covariance matrix.


urut/nov04; major revision urut/nov05

CROSS-REFERENCE INFORMATION

This function calls:

defineSortingConstants constants for sorting. see spikesortingParameters.txt for explanations.
calcDistMacro calculate the appropriate distance for the method chosen
calculateDistanceNorm2 norm as distance measurements (if whitened). takes all whitened spikes of

This function is called by:

sortMain mode: 1=with GUI; 2=no GUI (textmode
plotSimulatedAlignPerf summary plot of aligned waveforms. also clusters waveforms to illustrate number of clusters (rather than quality of sorting).
runSimulatedEval detects and sorts spike of a simulated file. calculates statistics about performance.